dc.contributor.author
Schulz, R.
dc.contributor.author
Hansen, Y. von
dc.contributor.author
Daldrop, Jan O.
dc.contributor.author
Kappler, Julian
dc.contributor.author
Noé, F.
dc.contributor.author
Netz, Roland R.
dc.date.accessioned
2019-03-28T12:19:49Z
dc.date.available
2019-03-28T12:19:49Z
dc.identifier.uri
https://refubium.fu-berlin.de/handle/fub188/24217
dc.identifier.uri
http://dx.doi.org/10.17169/refubium-1989
dc.description.abstract
We investigate barrier-crossing processes corresponding to collective hydrogen-bond rearrangements in liquid water using Markov state modeling techniques. The analysis is based on trajectories from classical molecular dynamics simulations and accounts for the full dynamics of relative angular and separation coordinates of water clusters and requires no predefined hydrogen bond criterium. We account for the complete 12-dimensional conformational subspace of three water molecules and distinguish five well-separated slow dynamic processes with relaxation times in the picosecond range, followed by a quasi-continuum spectrum of faster modes. By analysis of the Markov eigenstates, these processes are shown to correspond to different collective interchanges of hydrogen-bond donors and acceptors. Using a projection onto hydrogen-bond states, we also analyze the switching of one hydrogen bond between two acceptor water molecules and derive the complete transition network. The most probable pathway corresponds to a direct switch without an intermediate, in agreement with previous studies. However, a considerable fraction of paths proceeds along alternative routes that involve different intermediate states with short-lived alternative hydrogen bonds or weakly bound states.
en
dc.rights.uri
http://www.fu-berlin.de/sites/refubium/rechtliches/Nutzungsbedingungen
dc.subject
Markov Models of Molecular Kinetics
en
dc.subject
Stochastic processes
en
dc.subject
Free energy landscapes
en
dc.subject
Markov processes
en
dc.subject
Classical statistical mechanics
en
dc.subject
Hydrogen bonding
en
dc.subject
Molecular dynamics
en
dc.subject
Probability theory
en
dc.subject.ddc
500 Natural sciences and mathematics::530 Physics::530 Physics
dc.title
Collective hydrogen-bond rearrangement dynamics in liquid water
dc.type
Wissenschaftlicher Artikel
dcterms.bibliographicCitation.articlenumber
244504
dcterms.bibliographicCitation.doi
10.1063/1.5054267
dcterms.bibliographicCitation.journaltitle
Journal of Chemical Physics
dcterms.bibliographicCitation.number
24
dcterms.bibliographicCitation.volume
149
dcterms.bibliographicCitation.url
https://aip.scitation.org/doi/10.1063/1.5054267
refubium.affiliation
Physik
refubium.affiliation.other
Institut für Theoretische Physik
refubium.funding
Open Access Publikation in Allianzlizenz
refubium.resourceType.isindependentpub
no
dcterms.accessRights.openaire
open access
dcterms.isPartOf.issn
0021-9606 (Print)
dcterms.isPartOf.issn
1089-7690 (Online)