dc.contributor.author
Marzahl, Christian
dc.contributor.author
Aubreville, Marc
dc.contributor.author
Bertram, Christof A.
dc.contributor.author
Maier, Jennifer
dc.contributor.author
Bergler, Christian
dc.contributor.author
Kröger, Christine
dc.contributor.author
Voigt, Jörn
dc.contributor.author
Breininger, Katharina
dc.contributor.author
Klopfleisch, Robert
dc.contributor.author
Maier, Andreas
dc.date.accessioned
2021-05-06T11:29:46Z
dc.date.available
2021-05-06T11:29:46Z
dc.identifier.uri
https://refubium.fu-berlin.de/handle/fub188/30666
dc.identifier.uri
http://dx.doi.org/10.17169/refubium-30405
dc.description.abstract
In many research areas, scientific progress is accelerated by multidisciplinary access to image data and their interdisciplinary annotation. However, keeping track of these annotations to ensure a high-quality multi-purpose data set is a challenging and labour intensive task. We developed the open-source online platform EXACT (EXpert Algorithm Collaboration Tool) that enables the collaborative interdisciplinary analysis of images from different domains online and offline. EXACT supports multi-gigapixel medical whole slide images as well as image series with thousands of images. The software utilises a flexible plugin system that can be adapted to diverse applications such as counting mitotic figures with a screening mode, finding false annotations on a novel validation view, or using the latest deep learning image analysis technologies. This is combined with a version control system which makes it possible to keep track of changes in the data sets and, for example, to link the results of deep learning experiments to specific data set versions. EXACT is freely available and has already been successfully applied to a broad range of annotation tasks, including highly diverse applications like deep learning supported cytology scoring, interdisciplinary multi-centre whole slide image tumour annotation, and highly specialised whale sound spectroscopy clustering.
en
dc.format.extent
11 Seiten
dc.rights.uri
https://creativecommons.org/licenses/by/4.0/
dc.subject
Computer science
en
dc.subject
Scientific data
en
dc.subject.ddc
500 Naturwissenschaften und Mathematik::570 Biowissenschaften; Biologie::570 Biowissenschaften; Biologie
dc.title
EXACT: a collaboration toolset for algorithm-aided annotation of images with annotation version control
dc.type
Wissenschaftlicher Artikel
dcterms.bibliographicCitation.articlenumber
4343
dcterms.bibliographicCitation.doi
10.1038/s41598-021-83827-4
dcterms.bibliographicCitation.journaltitle
Scientific Reports
dcterms.bibliographicCitation.number
1
dcterms.bibliographicCitation.volume
11
dcterms.bibliographicCitation.url
https://doi.org/10.1038/s41598-021-83827-4
refubium.affiliation
Veterinärmedizin
refubium.affiliation.other
Institut für Tierpathologie
![Dieser Normdateneintrag wurde von einer Benutzerin oder einem Benutzer als gültig bestätigt.](/cache_202e45ad85b55efaeb29160f63cd3f3b/themes/FuCD/images/authority_control/invisible.gif)
refubium.resourceType.isindependentpub
no
dcterms.accessRights.openaire
open access
dcterms.isPartOf.eissn
2045-2322
refubium.resourceType.provider
WoS-Alert